HHsearch alignment for GI: 254780694 and conserved domain: COG2197
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].
Probab=99.90 E-value=2.1e-22 Score=162.74 Aligned_cols=157 Identities=20% Similarity=0.175 Sum_probs=112.2
Q ss_pred CCEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCC
Q ss_conf 32100068958999999966984517389999852324430325433332144571475033736899999997178754
Q gi|254780694|r 74 LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153 (246)
Q Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (246)
T Consensus 52 ~Dl~mP~~~G~e~~~~l~~~~p~~--------~vvvlt~~~~~~~v~~~l~~Ga~gyl~K~~~~~~l~~ai~~v~~G~~~ 123 (211)
T COG2197 52 LDLSMPGMDGLEALKQLRARGPDI--------KVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTY 123 (211)
T ss_pred EECCCCCCCHHHHHHHHHHHCCCC--------EEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCE
T ss_conf 837889987599999999868997--------299996778989999999779969986799999999999999758858
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 698999999999999997542014677988-8889779999999985999799999949998899999999999807998
Q gi|254780694|r 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 (246)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~ 232 (246)
T Consensus 124 ~~~~~~~~~~~~~~-------~~~-~~~~~~~~LT~RE~eVl~lla~G~snkeIA~~L~iS~~TVk~h~~~i~~KL~v~~ 195 (211)
T COG2197 124 LPPDIARKLAGLLP-------SSS-AEAPLAELLTPRELEVLRLLAEGLSNKEIAEELNLSEKTVKTHVSNILRKLGVRN 195 (211)
T ss_pred ECHHHHHHHHHCCC-------CCC-CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 78899999975035-------655-4433357899899999999987998899999978789899999999999839998
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 89999999975898
Q gi|254780694|r 233 RSGAIAYAVRNNIV 246 (246)
Q Consensus 233 R~eav~~A~~~Gli 246 (246)
T Consensus 196 Rtea~~~a~~~g~~ 209 (211)
T COG2197 196 RTEAAIRALRLGLI 209 (211)
T ss_pred HHHHHHHHHHCCCC
T ss_conf 99999999982675