HHsearch alignment for GI: 254780694 and conserved domain: PRK05658

>PRK05658 RNA polymerase sigma factor RpoD; Validated.

Probab=94.66  E-value=0.32  Score=26.67  Aligned_cols=53  Identities=26%  Similarity=0.391  Sum_probs=47.1

Q ss_pred             CCCHHHHHHHHH---H--HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             889779999999---9--8599979999994999889999999999980799889999
Q gi|254780694|r  185 ELTGREVECLTW---I--SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI  237 (246)
Q Consensus       185 ~LT~RE~eVl~l---i--a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav  237 (246)
T Consensus       557 ~Lt~rE~~vl~~RfGi~~~~~~TLeevg~~f~vtRERiRQIEakalrklrhp~r~~~l  614 (620)
T PRK05658        557 SLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSRKL  614 (620)
T ss_pred             CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             7999999999995799999967899999882976898999999999985687257888