HHsearch alignment for GI: 254780694 and conserved domain: PRK05901
>PRK05901 RNA polymerase sigma factor; Provisional.
Probab=96.59 E-value=0.008 Score=36.97 Aligned_cols=53 Identities=28% Similarity=0.426 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 8897799999999-----8599979999994999889999999999980799889999
Q gi|254780694|r 185 ELTGREVECLTWI-----SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 (246)
Q Consensus 185 ~LT~RE~eVl~li-----a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav 237 (246)
T Consensus 335 ~L~~REr~Ii~~RyGL~~~~~~TL~eIg~~lgvSrERVRQIE~kAL~KLR~~~~~~~l 392 (398)
T PRK05901 335 TLSEREAGVIRMRFGLTDGQPKTLDEIGQVYGVTRERIRQIESKTMRKLRHPSRSQVL 392 (398)
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 8999999999997589998960399999897969999999999999996783788799