HHsearch alignment for GI: 254780694 and conserved domain: PRK06288

>PRK06288 RNA polymerase sigma factor WhiG; Reviewed.

Probab=97.17  E-value=0.0011  Score=42.60  Aligned_cols=46  Identities=22%  Similarity=0.282  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             8889779999999-985999799999949998899999999999807
Q gi|254780694|r  184 FELTGREVECLTW-ISEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       184 ~~LT~RE~eVl~l-ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       207 ~~L~erEr~Il~lry~e~~Tl~eIa~~lgiS~eRVrQie~~AL~kLR  253 (261)
T PRK06288        207 NTLPEREKKVITLYYYEDLTLKEIGEVLGVTESRISQIHTKAVLQLR  253 (261)
T ss_pred             HCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             70899999999998079988999999979789999999999999999