HHsearch alignment for GI: 254780694 and conserved domain: PRK06704
>PRK06704 RNA polymerase factor sigma-70; Validated.
Probab=92.54 E-value=0.56 Score=25.12 Aligned_cols=59 Identities=14% Similarity=0.123 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC-----------CCHHHHHHHHHHC
Q ss_conf 8897799999999-859997999999499988999999999998079-----------9889999999975
Q gi|254780694|r 185 ELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTAT-----------KTRSGAIAYAVRN 243 (246)
Q Consensus 185 ~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv-----------~~R~eav~~A~~~ 243 (246)
T Consensus 116 ~L~p~Q~vIfLLkDVF~ys~~eiAe~~s~sEGaVKasLfRsR~RLK~~~ee~~~~~~~~~D~e~~V~air~ 186 (228)
T PRK06704 116 SLNVQQSAILLLKDVFQYSIADIAKVCSVSEGAVKASLFRSRNRLKTVSEEGIEIVEFTDDMEVVVTSIRE 186 (228)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 25888899999999987559999999556634999999999999873385312456667762799999986