HHsearch alignment for GI: 254780694 and conserved domain: PRK06704

>PRK06704 RNA polymerase factor sigma-70; Validated.
Probab=92.54  E-value=0.56  Score=25.12  Aligned_cols=59  Identities=14%  Similarity=0.123  Sum_probs=47.7

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC-----------CCHHHHHHHHHHC
Q ss_conf             8897799999999-859997999999499988999999999998079-----------9889999999975
Q gi|254780694|r  185 ELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTAT-----------KTRSGAIAYAVRN  243 (246)
Q Consensus       185 ~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv-----------~~R~eav~~A~~~  243 (246)
T Consensus       116 ~L~p~Q~vIfLLkDVF~ys~~eiAe~~s~sEGaVKasLfRsR~RLK~~~ee~~~~~~~~~D~e~~V~air~  186 (228)
T PRK06704        116 SLNVQQSAILLLKDVFQYSIADIAKVCSVSEGAVKASLFRSRNRLKTVSEEGIEIVEFTDDMEVVVTSIRE  186 (228)
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHH
T ss_conf             25888899999999987559999999556634999999999999873385312456667762799999986