HHsearch alignment for GI: 254780694 and conserved domain: PRK06930

>PRK06930 positive control sigma-like factor; Validated.

Probab=98.49  E-value=2.7e-07  Score=65.69  Aligned_cols=47  Identities=34%  Similarity=0.337  Sum_probs=42.1

Q ss_pred             CCCCHHHHHHH-HHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf             88897799999-999859997999999499988999999999998079
Q gi|254780694|r  184 FELTGREVECL-TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT  230 (246)
Q Consensus       184 ~~LT~RE~eVl-~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv  230 (246)
T Consensus       113 s~Lt~rErevfll~~~~glsy~EIA~~L~Is~~tV~~~l~RA~~Ki~~  160 (170)
T PRK06930        113 SVLTEREKEVYLMHRGYGLSYSEIAAYLNIKKSTVQSMIERAEKKIAK  160 (170)
T ss_pred             HHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             856988889998897618889999999798899999999999999999