HHsearch alignment for GI: 254780694 and conserved domain: PRK06986
>PRK06986 fliA flagellar biosynthesis sigma factor; Validated.
Probab=97.06 E-value=0.0015 Score=41.74 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 8897799999999-85999799999949998899999999999807
Q gi|254780694|r 185 ELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 185 ~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 183 ~L~~rEr~Ii~l~y~~~~tl~eIa~~lgiS~eRVrQie~~AL~kLR 228 (234)
T PRK06986 183 KLPEREQLVLSLYYDEELNLKEIGAVLGVSESRVSQIHSQAIKRLR 228 (234)
T ss_pred HCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 0999999999987389989999999979789999999999999999