HHsearch alignment for GI: 254780694 and conserved domain: PRK07122

>PRK07122 RNA polymerase sigma factor SigF; Reviewed.
Probab=97.25  E-value=0.00093  Score=42.99  Aligned_cols=46  Identities=28%  Similarity=0.285  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             88897799999999-85999799999949998899999999999807
Q gi|254780694|r  184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       213 ~~L~eREr~Vi~lry~e~~Tl~EIa~~lGiSreRVrQIe~~AL~KLR  259 (263)
T PRK07122        213 AALPERERTVLVLRFFESMTQTQIAERVGISQMHVSRLLAKSLARLR  259 (263)
T ss_pred             HCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             75999999999999569998999999989799999999999999999