HHsearch alignment for GI: 254780694 and conserved domain: PRK07122
>PRK07122 RNA polymerase sigma factor SigF; Reviewed.
Probab=97.25 E-value=0.00093 Score=42.99 Aligned_cols=46 Identities=28% Similarity=0.285 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 88897799999999-85999799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 213 ~~L~eREr~Vi~lry~e~~Tl~EIa~~lGiSreRVrQIe~~AL~KLR 259 (263)
T PRK07122 213 AALPERERTVLVLRFFESMTQTQIAERVGISQMHVSRLLAKSLARLR 259 (263)
T ss_pred HCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 75999999999999569998999999989799999999999999999