HHsearch alignment for GI: 254780694 and conserved domain: PRK07406

>PRK07406 RNA polymerase sigma factor RpoD; Validated.
Probab=96.39  E-value=0.016  Score=35.04  Aligned_cols=54  Identities=28%  Similarity=0.430  Sum_probs=47.6

Q ss_pred             CCCHHHHHHHHHHH---CC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf             88977999999998---59--99799999949998899999999999807998899999
Q gi|254780694|r  185 ELTGREVECLTWIS---EG--KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA  238 (246)
Q Consensus       185 ~LT~RE~eVl~lia---~G--~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~  238 (246)
T Consensus       323 ~L~eREr~II~lRfGL~dg~~~TL~EIg~~lgISRERVRQIE~rAL~KLR~p~r~~~L~  381 (385)
T PRK07406        323 TLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLK  381 (385)
T ss_pred             CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             49999999999975899999646999998979599999999999999967717789999