HHsearch alignment for GI: 254780694 and conserved domain: PRK07406
>PRK07406 RNA polymerase sigma factor RpoD; Validated.
Probab=96.39 E-value=0.016 Score=35.04 Aligned_cols=54 Identities=28% Similarity=0.430 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHH---CC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 88977999999998---59--99799999949998899999999999807998899999
Q gi|254780694|r 185 ELTGREVECLTWIS---EG--KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238 (246)
Q Consensus 185 ~LT~RE~eVl~lia---~G--~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~ 238 (246)
T Consensus 323 ~L~eREr~II~lRfGL~dg~~~TL~EIg~~lgISRERVRQIE~rAL~KLR~p~r~~~L~ 381 (385)
T PRK07406 323 TLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLK 381 (385)
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 49999999999975899999646999998979599999999999999967717789999