HHsearch alignment for GI: 254780694 and conserved domain: PRK07670

>PRK07670 RNA polymerase sigma factor SigD; Validated.
Probab=97.01  E-value=0.0017  Score=41.22  Aligned_cols=46  Identities=22%  Similarity=0.253  Sum_probs=41.8

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             88897799999999-85999799999949998899999999999807
Q gi|254780694|r  184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       196 ~~L~~rEr~Vl~l~y~e~~Tl~eIa~~lgvS~erVrQi~~~AL~kLr  242 (250)
T PRK07670        196 KELNEKEQLVISLFYKEELTLTEIGQVLNLSTSRISQIHSKALFKLK  242 (250)
T ss_pred             HCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             55899999999997489868999999989799999999999999999