HHsearch alignment for GI: 254780694 and conserved domain: PRK07670
>PRK07670 RNA polymerase sigma factor SigD; Validated.
Probab=97.01 E-value=0.0017 Score=41.22 Aligned_cols=46 Identities=22% Similarity=0.253 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 88897799999999-85999799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 196 ~~L~~rEr~Vl~l~y~e~~Tl~eIa~~lgvS~erVrQi~~~AL~kLr 242 (250)
T PRK07670 196 KELNEKEQLVISLFYKEELTLTEIGQVLNLSTSRISQIHSKALFKLK 242 (250)
T ss_pred HCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 55899999999997489868999999989799999999999999999