HHsearch alignment for GI: 254780694 and conserved domain: PRK08241
>PRK08241 RNA polymerase factor sigma-70; Validated.
Probab=96.33 E-value=0.0057 Score=37.94 Aligned_cols=46 Identities=26% Similarity=0.245 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 8897799999999-859997999999499988999999999998079
Q gi|254780694|r 185 ELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 (246)
Q Consensus 185 ~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv 230 (246)
T Consensus 156 ~Lpp~QRavlvLRdV~g~s~~EiAe~Lg~S~aAVks~L~RARa~L~~ 202 (341)
T PRK08241 156 HLPPRQRAVLLLRDVLGWSAAEVAEALGTSTAAVNSALQRARATLAE 202 (341)
T ss_pred HCCHHHHEEEEHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 39997902001297529988999999789999999999999999986