HHsearch alignment for GI: 254780694 and conserved domain: PRK08295
>PRK08295 RNA polymerase factor sigma-70; Validated.
Probab=98.14 E-value=6.3e-06 Score=56.91 Aligned_cols=45 Identities=29% Similarity=0.332 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 889779999999985999799999949998899999999999807
Q gi|254780694|r 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 185 ~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 155 ~l~~~e~~V~~~~~eg~s~~EIA~~l~is~~tV~~~l~RarkkLr 199 (209)
T PRK08295 155 LLSDLEKEVLELYLDGKSYQEIAEELNRHVKSIDNALQRVKRKLE 199 (209)
T ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 691899999999986999999999989299999999999999999