HHsearch alignment for GI: 254780694 and conserved domain: PRK09210
>PRK09210 RNA polymerase sigma factor RpoD; Validated.
Probab=96.25 E-value=0.017 Score=34.84 Aligned_cols=53 Identities=26% Similarity=0.379 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 88897799999999-----859997999999499988999999999998079988999
Q gi|254780694|r 184 FELTGREVECLTWI-----SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 (246)
Q Consensus 184 ~~LT~RE~eVl~li-----a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~ea 236 (246)
T Consensus 305 ~~L~~REr~Il~~RfGL~~~~~~TLeEIg~~lgvSRERVRQIE~kAL~KLR~~~~~~~ 362 (368)
T PRK09210 305 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 362 (368)
T ss_pred HCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 1799999999999759996896149999989697989999999999999767368789