HHsearch alignment for GI: 254780694 and conserved domain: PRK09210

>PRK09210 RNA polymerase sigma factor RpoD; Validated.
Probab=96.25  E-value=0.017  Score=34.84  Aligned_cols=53  Identities=26%  Similarity=0.379  Sum_probs=46.4

Q ss_pred             CCCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             88897799999999-----859997999999499988999999999998079988999
Q gi|254780694|r  184 FELTGREVECLTWI-----SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA  236 (246)
Q Consensus       184 ~~LT~RE~eVl~li-----a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~ea  236 (246)
T Consensus       305 ~~L~~REr~Il~~RfGL~~~~~~TLeEIg~~lgvSRERVRQIE~kAL~KLR~~~~~~~  362 (368)
T PRK09210        305 DTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ  362 (368)
T ss_pred             HCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             1799999999999759996896149999989697989999999999999767368789