HHsearch alignment for GI: 254780694 and conserved domain: PRK09637
>PRK09637 RNA polymerase sigma factor SigZ; Provisional.
Probab=98.24 E-value=3.1e-06 Score=58.89 Aligned_cols=46 Identities=26% Similarity=0.211 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 88897799999999-85999799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 105 ~~Lp~~~R~v~~L~~~eg~s~~EIA~~L~is~~tVksrl~RAr~~Lr 151 (181)
T PRK09637 105 DALPEKYAEALRLTELEGLSQKEIAEKLGLSLSGAKSRVQRGRVKLK 151 (181)
T ss_pred HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 76999998997999885999999999989499999999999999999