HHsearch alignment for GI: 254780694 and conserved domain: PRK09641
>PRK09641 RNA polymerase sigma factor SigW; Provisional.
Probab=98.11 E-value=7.6e-06 Score=56.38 Aligned_cols=46 Identities=20% Similarity=0.157 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 88897799999999-85999799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 135 ~~Lp~~~r~v~~L~~~~~~s~~EIA~~l~is~~tVk~~l~RAr~~Lr 181 (187)
T PRK09641 135 LQLPDKYRTVIVLKYIEELSLKEISEILDLPVGTVKTRIHRGREALR 181 (187)
T ss_pred HHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 82898888999999982998999999989399999999999999999