HHsearch alignment for GI: 254780694 and conserved domain: PRK09641

>PRK09641 RNA polymerase sigma factor SigW; Provisional.
Probab=98.11  E-value=7.6e-06  Score=56.38  Aligned_cols=46  Identities=20%  Similarity=0.157  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             88897799999999-85999799999949998899999999999807
Q gi|254780694|r  184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       135 ~~Lp~~~r~v~~L~~~~~~s~~EIA~~l~is~~tVk~~l~RAr~~Lr  181 (187)
T PRK09641        135 LQLPDKYRTVIVLKYIEELSLKEISEILDLPVGTVKTRIHRGREALR  181 (187)
T ss_pred             HHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             82898888999999982998999999989399999999999999999