HHsearch alignment for GI: 254780694 and conserved domain: PRK09642

>PRK09642 RNA polymerase sigma factor SigW; Reviewed.

Probab=97.92  E-value=3.1e-05  Score=52.50  Aligned_cols=45  Identities=22%  Similarity=0.102  Sum_probs=41.9

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             8897799999999-85999799999949998899999999999807
Q gi|254780694|r  185 ELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       185 ~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       106 ~Lp~~~R~v~~L~~~e~~s~~EIA~~l~is~~tVk~~l~RArk~Lk  151 (160)
T PRK09642        106 ELPENYRDVVLAHYLEEKSYQEIALQENIEVKTVEMKLYRARKWIK  151 (160)
T ss_pred             HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             7999999997999982999999999989199999999999999999