HHsearch alignment for GI: 254780694 and conserved domain: PRK09644

>PRK09644 RNA polymerase sigma factor SigM; Provisional.

Probab=98.00  E-value=1.7e-05  Score=54.21  Aligned_cols=46  Identities=17%  Similarity=0.153  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             88897799999999-85999799999949998899999999999807
Q gi|254780694|r  184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       107 ~~Lp~~~r~v~~L~~~~~~s~~EIA~~l~is~~tVk~rl~RAr~~Lr  153 (165)
T PRK09644        107 HTLPVIEAQAILLCDVHELTYEEAASVLDLKENTYKSHLFRGRKRLK  153 (165)
T ss_pred             HCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             72999999999999998889999999989399999999999999999