HHsearch alignment for GI: 254780694 and conserved domain: PRK09646
>PRK09646 RNA polymerase sigma factor SigK; Reviewed.
Probab=98.29 E-value=1.8e-06 Score=60.46 Aligned_cols=45 Identities=27% Similarity=0.259 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 88897799999999-8599979999994999889999999999980
Q gi|254780694|r 184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
T Consensus 141 ~~Lp~~~R~vi~L~~~~g~s~~EIA~~Lgis~~TVk~rl~rA~~~L 186 (194)
T PRK09646 141 DALTDTQREAITLAYYGGLTYREVAERLAVPLGTVKTRMRDGLRRL 186 (194)
T ss_pred HHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 8678157899999999399999999998919999999999999999