HHsearch alignment for GI: 254780694 and conserved domain: PRK09647
>PRK09647 RNA polymerase sigma factor SigE; Reviewed.
Probab=98.08 E-value=9.9e-06 Score=55.65 Aligned_cols=46 Identities=24% Similarity=0.180 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 88897799999999-85999799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 156 ~~Lp~~qR~vl~Lr~~eglS~~EIAe~Lgis~gTVKsrl~RAr~~LR 202 (222)
T PRK09647 156 DSLPPEFRAAVVLCDIEGLSYEEIAATLGVKLGTVRSRIHRGRQALR 202 (222)
T ss_pred HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 82999998899879963999999999989399999999999999999