HHsearch alignment for GI: 254780694 and conserved domain: PRK09649

>PRK09649 RNA polymerase sigma factor SigC; Reviewed.
Probab=97.92  E-value=3.2e-05  Score=52.36  Aligned_cols=47  Identities=19%  Similarity=0.180  Sum_probs=43.0

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf             88897799999999-859997999999499988999999999998079
Q gi|254780694|r  184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTAT  230 (246)
Q Consensus       184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv  230 (246)
T Consensus       129 ~~Lp~~~R~vl~L~~~egls~~EIA~~lg~~~gTVKsRl~RAR~~L~a  176 (185)
T PRK09649        129 ADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLA  176 (185)
T ss_pred             HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             849999999999899729999999999893999999999999999997