HHsearch alignment for GI: 254780694 and conserved domain: PRK09649
>PRK09649 RNA polymerase sigma factor SigC; Reviewed.
Probab=97.92 E-value=3.2e-05 Score=52.36 Aligned_cols=47 Identities=19% Similarity=0.180 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 88897799999999-859997999999499988999999999998079
Q gi|254780694|r 184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 (246)
Q Consensus 184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv 230 (246)
T Consensus 129 ~~Lp~~~R~vl~L~~~egls~~EIA~~lg~~~gTVKsRl~RAR~~L~a 176 (185)
T PRK09649 129 ADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLA 176 (185)
T ss_pred HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 849999999999899729999999999893999999999999999997