HHsearch alignment for GI: 254780694 and conserved domain: PRK10100

>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional.
Probab=99.91  E-value=1.7e-23  Score=169.70  Aligned_cols=123  Identities=24%  Similarity=0.159  Sum_probs=99.9

Q ss_pred             CCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf             32543333214457147503373689999999717875469899999999999999754201467798888897799999
Q gi|254780694|r  115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL  194 (246)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVl  194 (246)
T Consensus        92 d~e~v~~al~aGa~GyllK~~~~~~Li~aIr~v~~G~~~l~~~~~~~l~~-------~~~~~~~~~~~~~~LT~RE~eIL  164 (216)
T PRK10100         92 DYPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYFTQKLASYLIT-------HSGNYRYNSTESALLTHREKEIL  164 (216)
T ss_pred             CHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH-------HHCCCCCCCCCCCCCCHHHHHHH
T ss_conf             48999999765876676689999999999999987997239999999997-------10225678877789998999999


Q ss_pred             HHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf             99985999799999949998899999999999807998899999999758
Q gi|254780694|r  195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN  244 (246)
Q Consensus       195 ~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~G  244 (246)
T Consensus       165 ~lla~G~sNkEIA~~L~iSe~TVk~H~~~I~~KL~v~~R~qav~~A~~nl  214 (216)
T PRK10100        165 NKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWANDNL  214 (216)
T ss_pred             HHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf             99987999999998949889899999999999809999999999999866