HHsearch alignment for GI: 254780694 and conserved domain: PRK10100
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional.
Probab=99.91 E-value=1.7e-23 Score=169.70 Aligned_cols=123 Identities=24% Similarity=0.159 Sum_probs=99.9
Q ss_pred CCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 32543333214457147503373689999999717875469899999999999999754201467798888897799999
Q gi|254780694|r 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 (246)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVl 194 (246)
T Consensus 92 d~e~v~~al~aGa~GyllK~~~~~~Li~aIr~v~~G~~~l~~~~~~~l~~-------~~~~~~~~~~~~~~LT~RE~eIL 164 (216)
T PRK10100 92 DYPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYFTQKLASYLIT-------HSGNYRYNSTESALLTHREKEIL 164 (216)
T ss_pred CHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH-------HHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 48999999765876676689999999999999987997239999999997-------10225678877789998999999
Q ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 99985999799999949998899999999999807998899999999758
Q gi|254780694|r 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 (246)
Q Consensus 195 ~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~G 244 (246)
T Consensus 165 ~lla~G~sNkEIA~~L~iSe~TVk~H~~~I~~KL~v~~R~qav~~A~~nl 214 (216)
T PRK10100 165 NKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWANDNL 214 (216)
T ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 99987999999998949889899999999999809999999999999866