HHsearch alignment for GI: 254780694 and conserved domain: PRK10161

>PRK10161 transcriptional regulator PhoB; Provisional.
Probab=97.20  E-value=0.00092  Score=43.01  Aligned_cols=184  Identities=8%  Similarity=0.042  Sum_probs=94.9

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCEEEEECC---------CCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             2799999999999998719302300026---------6631112321000689589999999669845173899998523
Q gi|254780694|r   39 LDCTVSWTMRMYALTEYVGASHFLLVRW---------DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF  109 (246)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  109 (246)
T Consensus         8 VEDd~~l~~~l~~~L~~~g~~v~~a~~g~~a~~~l~~~~~DliilDi~lP~~dG~~~~~~ir~~~~~~~~PII------~   81 (229)
T PRK10161          8 VEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVV------M   81 (229)
T ss_pred             EECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEE------E
T ss_conf             9599999999999999779999998999999999852899899997899887633587887750246897589------9


Q ss_pred             HHHHCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf             24430325433332144571475033736899999997178754698999999999999997542014677988888977
Q gi|254780694|r  110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR  189 (246)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~R  189 (246)
T Consensus        82 lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~aRi~a~lrR~~~~~~~~~~~~~~l---~~d~~~~~v~~~~~~i~LT~~  158 (229)
T PRK10161         82 LTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGL---SLDPTSHRVMAGEEPLEMGPT  158 (229)
T ss_pred             EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCE---EEEEEEEEEEECCEEEECCHH
T ss_conf             95566657799998769876520899989999999999712377776543267778---986101599999999870689


Q ss_pred             HHHHHHHHHCC----CCHHHHHHHHC-----CCHHHHHHHHHHHHHHHCCC
Q ss_conf             99999999859----99799999949-----99889999999999980799
Q gi|254780694|r  190 EVECLTWISEG----KTSDEIAVILG-----ISRNTVNNYIASIMRKTATK  231 (246)
Q Consensus       190 E~eVl~lia~G----~t~~eIA~~L~-----iS~~TV~~hl~~i~~KLgv~  231 (246)
T Consensus       159 E~~LL~~L~~~~g~vvsr~~L~~~vwg~~~~~~~rtldv~I~rLRkKl~~~  209 (229)
T PRK10161        159 EFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG  209 (229)
T ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             999999999779987979999998639998988473999999999974567