HHsearch alignment for GI: 254780694 and conserved domain: PRK10161
>PRK10161 transcriptional regulator PhoB; Provisional.
Probab=97.20 E-value=0.00092 Score=43.01 Aligned_cols=184 Identities=8% Similarity=0.042 Sum_probs=94.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECC---------CCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 2799999999999998719302300026---------6631112321000689589999999669845173899998523
Q gi|254780694|r 39 LDCTVSWTMRMYALTEYVGASHFLLVRW---------DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF 109 (246)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 109 (246)
T Consensus 8 VEDd~~l~~~l~~~L~~~g~~v~~a~~g~~a~~~l~~~~~DliilDi~lP~~dG~~~~~~ir~~~~~~~~PII------~ 81 (229)
T PRK10161 8 VEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVV------M 81 (229)
T ss_pred EECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEE------E
T ss_conf 9599999999999999779999998999999999852899899997899887633587887750246897589------9
Q ss_pred HHHHCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 24430325433332144571475033736899999997178754698999999999999997542014677988888977
Q gi|254780694|r 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189 (246)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~R 189 (246)
T Consensus 82 lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~aRi~a~lrR~~~~~~~~~~~~~~l---~~d~~~~~v~~~~~~i~LT~~ 158 (229)
T PRK10161 82 LTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGL---SLDPTSHRVMAGEEPLEMGPT 158 (229)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCE---EEEEEEEEEEECCEEEECCHH
T ss_conf 95566657799998769876520899989999999999712377776543267778---986101599999999870689
Q ss_pred HHHHHHHHHCC----CCHHHHHHHHC-----CCHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999859----99799999949-----99889999999999980799
Q gi|254780694|r 190 EVECLTWISEG----KTSDEIAVILG-----ISRNTVNNYIASIMRKTATK 231 (246)
Q Consensus 190 E~eVl~lia~G----~t~~eIA~~L~-----iS~~TV~~hl~~i~~KLgv~ 231 (246)
T Consensus 159 E~~LL~~L~~~~g~vvsr~~L~~~vwg~~~~~~~rtldv~I~rLRkKl~~~ 209 (229)
T PRK10161 159 EFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG 209 (229)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 999999999779987979999998639998988473999999999974567