HHsearch alignment for GI: 254780694 and conserved domain: PRK10188
>PRK10188 DNA-binding transcriptional activator SdiA; Provisional.
Probab=100.00 E-value=3.8e-36 Score=250.90 Aligned_cols=218 Identities=19% Similarity=0.156 Sum_probs=176.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 21379999732799999999999998719302300026663111232100068958999999966984517389999852
Q gi|254780694|r 29 RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108 (246)
Q Consensus 29 ~~d~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 108 (246)
T Consensus 10 ~~~~l~~~~~a~~~~~~~~~l~~~~~~lGFey~~~~~~~p~p~~~p~~~l~snYP~~W~~~Y~~~~y~~iDPvv~~~~~s 89 (240)
T PRK10188 10 RRTMLLRFQEMAAAEEVYHELQLQTQQLEYDYYSLCVRHPVPFTRPKVAFYTTYPEAWVSHYQAENYLAIDPVLKPENFS 89 (240)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 99999999847999999999999999759825898874268888876688728999999999987791449510244468
Q ss_pred HHHHHCCCH--------HHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCC--CCC-HHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 324430325--------43333214457147503373689999999717875--469-8999999999999997542014
Q gi|254780694|r 109 FCPVFHTLP--------ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR--IIL-RDRLWEIGLLAAYQANMFKSYD 177 (246)
Q Consensus 109 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~ 177 (246)
T Consensus 90 ~~P~~W~~~l~~~~~~~~~eA~~~Gl~~G~t~p~~~~~g~~g~lSla~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~ 169 (240)
T PRK10188 90 QGHLMWNDDLFSEAQALWDAARAHGLRRGVTQCLMLPNRALGFLSFSRSSLREIPILSDELELRLQLLVRESLMALMRLE 169 (240)
T ss_pred CCCEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98730784012420999999998298676178887279983899985478877754355999999999999999998640
Q ss_pred --CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf --677988888977999999998599979999994999889999999999980799889999999975898
Q gi|254780694|r 178 --VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 (246)
Q Consensus 178 --~~~~~~~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gli 246 (246)
T Consensus 170 ~~~~~~~~~~LT~RE~E~L~W~A~GKTs~EIa~IL~ISe~TV~fHl~na~~KL~a~Nr~qAva~A~~~GLI 240 (240)
T PRK10188 170 DEMVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 (240)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 44457987889989999999997799999999883999999999999999995899899999999985899