HHsearch alignment for GI: 254780694 and conserved domain: PRK10360
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional.
Probab=99.88 E-value=1.5e-21 Score=157.13 Aligned_cols=195 Identities=14% Similarity=0.075 Sum_probs=126.2
Q ss_pred EEEEECCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCHHHH
Q ss_conf 00022144588887655302321379999732799999999999998719302300026663111232100068958999
Q gi|254780694|r 8 VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87 (246)
Q Consensus 8 ~~~~l~r~d~~r~~~v~~l~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (246)
T Consensus 2 i~I~IvDDh~l~r~gl~~~l~~~~~~~vv~~~~~~~~~l~~~~~----~~~dv-----------vllD~~mp~~~g~~~~ 66 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPG----RGVQV-----------CICDISMPDISGLELL 66 (196)
T ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHH----CCCCE-----------EEECCCCCCCCCHHHH
T ss_conf 19999879799999999998129995999998999999998874----49999-----------9987887886207799
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 99996698451738999985232443032543333214457147503373689999999717875469899999999999
Q gi|254780694|r 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 (246)
Q Consensus 88 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (246)
T Consensus 67 ~~l~~~-----~~v------ivls~~~~~~~~~~a~~~Ga~g~l~K~~~~~el~~aI~~v~~G~~~~~~~~~~~l~---- 131 (196)
T PRK10360 67 SQLPKG-----MAT------IMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLA---- 131 (196)
T ss_pred HHHHCC-----CCE------EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH----
T ss_conf 998438-----748------99973075999999997599889977899999999999998699567999999987----
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 999754201467798888897799999999859997999999499988999999999998079988999999997589
Q gi|254780694|r 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 (246)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gl 245 (246)
T Consensus 132 ------------~~~~~~LT~RE~eVL~lia~G~snkeIA~~L~IS~~TVk~h~~~i~~KL~v~~r~el~r~a~~-~~ 196 (196)
T PRK10360 132 ------------SGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARRMFD-GW 196 (196)
T ss_pred ------------CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHC-CC
T ss_conf ------------167689997999999999879999999999699999999999999998199999999999970-69