HHsearch alignment for GI: 254780694 and conserved domain: PRK10955
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional.
Probab=96.14 E-value=0.005 Score=38.30 Aligned_cols=115 Identities=11% Similarity=0.135 Sum_probs=68.8
Q ss_pred HHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH-H---HHCCCCCCCCCCCCHHHHH
Q ss_conf 54333321445714750337368999999971787546989999999999999975-4---2014677988888977999
Q gi|254780694|r 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM-F---KSYDVHWGKDFELTGREVE 192 (246)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~LT~RE~e 192 (246)
T Consensus 84 ~d~i~~l~~GADDYl~KPf~~~eL~ari~allrR~~~~~~~~~~~~~~~~~~~~~l~ld~~~~~~~~~~~~i~LT~~E~~ 163 (232)
T PRK10955 84 LDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSEQQQNNDNGSPTLEVDALSLNPGRQEASFDGQTLELTGTEFT 163 (232)
T ss_pred HHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEEECCCCEEEECCEEEECCHHHHH
T ss_conf 88999997697576338999899999999997615431001235678856998989998787799999999966899999
Q ss_pred HHHHHHCC----CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHCCC
Q ss_conf 99999859----9979999994-----999889999999999980799
Q gi|254780694|r 193 CLTWISEG----KTSDEIAVIL-----GISRNTVNNYIASIMRKTATK 231 (246)
Q Consensus 193 Vl~lia~G----~t~~eIA~~L-----~iS~~TV~~hl~~i~~KLgv~ 231 (246)
T Consensus 164 lL~~L~~~~g~vvsre~L~~~vwg~~~~~~~rtidv~I~rLRkKL~~~ 211 (232)
T PRK10955 164 LLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDR 211 (232)
T ss_pred HHHHHHHCCCCEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 999999789950979999999718898888582999999999954116