HHsearch alignment for GI: 254780694 and conserved domain: PRK10955

>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional.
Probab=96.14  E-value=0.005  Score=38.30  Aligned_cols=115  Identities=11%  Similarity=0.135  Sum_probs=68.8

Q ss_pred             HHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH-H---HHCCCCCCCCCCCCHHHHH
Q ss_conf             54333321445714750337368999999971787546989999999999999975-4---2014677988888977999
Q gi|254780694|r  117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM-F---KSYDVHWGKDFELTGREVE  192 (246)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~LT~RE~e  192 (246)
T Consensus        84 ~d~i~~l~~GADDYl~KPf~~~eL~ari~allrR~~~~~~~~~~~~~~~~~~~~~l~ld~~~~~~~~~~~~i~LT~~E~~  163 (232)
T PRK10955         84 LDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSEQQQNNDNGSPTLEVDALSLNPGRQEASFDGQTLELTGTEFT  163 (232)
T ss_pred             HHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEEECCCCEEEECCEEEECCHHHHH
T ss_conf             88999997697576338999899999999997615431001235678856998989998787799999999966899999


Q ss_pred             HHHHHHCC----CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHCCC
Q ss_conf             99999859----9979999994-----999889999999999980799
Q gi|254780694|r  193 CLTWISEG----KTSDEIAVIL-----GISRNTVNNYIASIMRKTATK  231 (246)
Q Consensus       193 Vl~lia~G----~t~~eIA~~L-----~iS~~TV~~hl~~i~~KLgv~  231 (246)
T Consensus       164 lL~~L~~~~g~vvsre~L~~~vwg~~~~~~~rtidv~I~rLRkKL~~~  211 (232)
T PRK10955        164 LLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDR  211 (232)
T ss_pred             HHHHHHHCCCCEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf             999999789950979999999718898888582999999999954116