HHsearch alignment for GI: 254780694 and conserved domain: PRK11922

>PRK11922 RNA polymerase sigma factor; Provisional.
Probab=98.23  E-value=3.3e-06  Score=58.72  Aligned_cols=46  Identities=20%  Similarity=0.137  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             88897799999999-85999799999949998899999999999807
Q gi|254780694|r  184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       148 ~~Lp~~~R~v~~L~~~eglS~~EIA~~Lgis~~TVKsrL~RArk~LR  194 (231)
T PRK11922        148 DALPDAFRAVFVLRVVEELSVEETAQALGLPEETVKTRLHRARRLLR  194 (231)
T ss_pred             HHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             80999999999999993999999999989399999999999999999