HHsearch alignment for GI: 254780694 and conserved domain: PRK11922
>PRK11922 RNA polymerase sigma factor; Provisional.
Probab=98.23 E-value=3.3e-06 Score=58.72 Aligned_cols=46 Identities=20% Similarity=0.137 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 88897799999999-85999799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 148 ~~Lp~~~R~v~~L~~~eglS~~EIA~~Lgis~~TVKsrL~RArk~LR 194 (231)
T PRK11922 148 DALPDAFRAVFVLRVVEELSVEETAQALGLPEETVKTRLHRARRLLR 194 (231)
T ss_pred HHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 80999999999999993999999999989399999999999999999