HHsearch alignment for GI: 254780694 and conserved domain: PRK11923
>PRK11923 algU RNA polymerase sigma factor AlgU; Provisional.
Probab=98.06 E-value=1.2e-05 Score=55.23 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 88897799999999-85999799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 137 ~~Lp~~~R~v~~L~~~egls~~EIA~~l~is~~tVk~rl~RAr~~Lr 183 (193)
T PRK11923 137 QQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAID 183 (193)
T ss_pred HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 81789899999999994999999999989299999999999999999