HHsearch alignment for GI: 254780694 and conserved domain: PRK11923

>PRK11923 algU RNA polymerase sigma factor AlgU; Provisional.
Probab=98.06  E-value=1.2e-05  Score=55.23  Aligned_cols=46  Identities=20%  Similarity=0.161  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             88897799999999-85999799999949998899999999999807
Q gi|254780694|r  184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       137 ~~Lp~~~R~v~~L~~~egls~~EIA~~l~is~~tVk~rl~RAr~~Lr  183 (193)
T PRK11923        137 QQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAID  183 (193)
T ss_pred             HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             81789899999999994999999999989299999999999999999