HHsearch alignment for GI: 254780694 and conserved domain: PRK12511

>PRK12511 RNA polymerase sigma factor; Provisional.
Probab=98.04  E-value=5.1e-06  Score=57.50  Aligned_cols=45  Identities=24%  Similarity=0.288  Sum_probs=42.0

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             8897799999999-85999799999949998899999999999807
Q gi|254780694|r  185 ELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       185 ~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       111 ~Lp~~~R~vl~L~~~egls~~EIAe~Lgis~gTVKsrl~RAr~~LR  156 (182)
T PRK12511        111 DLPEEQRAALHLVAIEGLSYQEAANVLGIPIGTLMSRIGRARAALR  156 (182)
T ss_pred             CCCHHHHHHEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             6999895011241007999999999989399999999999999999