HHsearch alignment for GI: 254780694 and conserved domain: PRK12511
>PRK12511 RNA polymerase sigma factor; Provisional.
Probab=98.04 E-value=5.1e-06 Score=57.50 Aligned_cols=45 Identities=24% Similarity=0.288 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 8897799999999-85999799999949998899999999999807
Q gi|254780694|r 185 ELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 185 ~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 111 ~Lp~~~R~vl~L~~~egls~~EIAe~Lgis~gTVKsrl~RAr~~LR 156 (182)
T PRK12511 111 DLPEEQRAALHLVAIEGLSYQEAANVLGIPIGTLMSRIGRARAALR 156 (182)
T ss_pred CCCHHHHHHEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 6999895011241007999999999989399999999999999999