HHsearch alignment for GI: 254780694 and conserved domain: PRK12512
>PRK12512 RNA polymerase sigma factor; Provisional.
Probab=98.15 E-value=6.4e-06 Score=56.89 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 8889779999999-9859997999999499988999999999998079
Q gi|254780694|r 184 FELTGREVECLTW-ISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 (246)
Q Consensus 184 ~~LT~RE~eVl~l-ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv 230 (246)
T Consensus 130 ~~Lp~~~R~vi~L~~~~g~s~~EIA~~lgis~~tVk~~l~RA~~~Lr~ 177 (184)
T PRK12512 130 ETLPPRQRDVVQSIAVEGASIKETAAKLSMSEGAVRVALHRGLAALAA 177 (184)
T ss_pred HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 689999999999998559799999999891999999999999999999