HHsearch alignment for GI: 254780694 and conserved domain: PRK12514
>PRK12514 RNA polymerase sigma factor; Provisional.
Probab=98.15 E-value=5.4e-06 Score=57.34 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 8897799999999-85999799999949998899999999999807
Q gi|254780694|r 185 ELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 185 ~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 129 ~Lp~~~r~~~~l~~~eg~s~~EIA~~l~is~~tVk~~l~rA~~~Lr 174 (179)
T PRK12514 129 ELEKDRAAAVRRAYLEGLSYKELAERHDVPLNTMRTWLRRSLLKLR 174 (179)
T ss_pred HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 7559999999999606998999999889099999999999999999