HHsearch alignment for GI: 254780694 and conserved domain: PRK12518

>PRK12518 RNA polymerase sigma factor; Provisional.

Probab=97.97  E-value=2.2e-05  Score=53.42  Aligned_cols=45  Identities=27%  Similarity=0.188  Sum_probs=41.8

Q ss_pred             CCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             889779999999-985999799999949998899999999999807
Q gi|254780694|r  185 ELTGREVECLTW-ISEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       185 ~LT~RE~eVl~l-ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       120 ~Lp~~~r~vi~l~~~~~~s~~EIA~~l~is~~tVk~~l~Ra~k~Lr  165 (175)
T PRK12518        120 TLSLEHRAVLVLHDLEDLPQKEIAEILNIPVGTVKSRLFYARRQLR  165 (175)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             6999999999999992999999999989599999999999999999