HHsearch alignment for GI: 254780694 and conserved domain: PRK12519

>PRK12519 RNA polymerase sigma factor; Provisional.

Probab=98.24  E-value=2.9e-06  Score=59.10  Aligned_cols=46  Identities=28%  Similarity=0.253  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             8889779999999-985999799999949998899999999999807
Q gi|254780694|r  184 FELTGREVECLTW-ISEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       184 ~~LT~RE~eVl~l-ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       140 ~~Lp~~~R~v~~L~~~eg~s~~EIA~~lgis~~tVk~rl~rA~~~Lr  186 (194)
T PRK12519        140 AQLPESQRQVLELAYYEGLSQSEIAKRLGIPLGTVKARARQGLLKLR  186 (194)
T ss_pred             HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             81998875688999981999999999989499999999999999999