HHsearch alignment for GI: 254780694 and conserved domain: PRK12520
>PRK12520 RNA polymerase sigma factor; Provisional.
Probab=97.90 E-value=3.2e-05 Score=52.37 Aligned_cols=46 Identities=13% Similarity=0.034 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 888977999999998-5999799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTWIS-EGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~lia-~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 130 ~~Lp~~~R~v~~Lr~~~~ls~~EIA~~l~~s~~tVk~~l~RAR~~Lr 176 (191)
T PRK12520 130 ERLPARTGRVFMMREWLELETEEICKELQITATNLWVMLYRARLRLR 176 (191)
T ss_pred HHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 87749999999999993899999999989499999999999999999