HHsearch alignment for GI: 254780694 and conserved domain: PRK12520

>PRK12520 RNA polymerase sigma factor; Provisional.
Probab=97.90  E-value=3.2e-05  Score=52.37  Aligned_cols=46  Identities=13%  Similarity=0.034  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             888977999999998-5999799999949998899999999999807
Q gi|254780694|r  184 FELTGREVECLTWIS-EGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       184 ~~LT~RE~eVl~lia-~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       130 ~~Lp~~~R~v~~Lr~~~~ls~~EIA~~l~~s~~tVk~~l~RAR~~Lr  176 (191)
T PRK12520        130 ERLPARTGRVFMMREWLELETEEICKELQITATNLWVMLYRARLRLR  176 (191)
T ss_pred             HHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             87749999999999993899999999989499999999999999999