HHsearch alignment for GI: 254780694 and conserved domain: PRK12524
>PRK12524 RNA polymerase sigma factor; Provisional.
Probab=98.15 E-value=6.3e-06 Score=56.90 Aligned_cols=46 Identities=26% Similarity=0.273 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 88897799999999-85999799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 135 ~~Lp~~~R~vi~L~~~eg~s~~EIA~~lgis~~tVk~~l~Rark~Lr 181 (196)
T PRK12524 135 AALPERQRQAVVLRHIEGLSNPEIAEVMQIGVEAVESLTARGKRALA 181 (196)
T ss_pred HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 85999999998999980899999999989299999999999999999