HHsearch alignment for GI: 254780694 and conserved domain: PRK12527

>PRK12527 RNA polymerase sigma factor; Reviewed.

Probab=98.29  E-value=1.9e-06  Score=60.20  Aligned_cols=46  Identities=33%  Similarity=0.341  Sum_probs=42.6

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf             8897799999999-859997999999499988999999999998079
Q gi|254780694|r  185 ELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTAT  230 (246)
Q Consensus       185 ~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv  230 (246)
T Consensus       105 ~Lp~~~R~v~~L~~~egls~~EIA~~lgis~~tVk~~l~rA~k~Lr~  151 (159)
T PRK12527        105 ELPPICRESFLLRKLEGLSHQQIAEHLGISRSLVEKHIVNAMKHCRV  151 (159)
T ss_pred             HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             69999989998898739799999999891999999999999999999