HHsearch alignment for GI: 254780694 and conserved domain: PRK12528
>PRK12528 RNA polymerase sigma factor; Provisional.
Probab=98.10 E-value=7.9e-06 Score=56.28 Aligned_cols=44 Identities=27% Similarity=0.246 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8889779999999-9859997999999499988999999999998
Q gi|254780694|r 184 FELTGREVECLTW-ISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 184 ~~LT~RE~eVl~l-ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
T Consensus 118 ~~LP~~~R~vf~L~r~~gls~~EIA~~LgiS~~tVk~~l~rA~~~ 162 (167)
T PRK12528 118 DGLPPLVKRAFLLAQVDGLGYGEIATELGISLATVKRYLNKAAMR 162 (167)
T ss_pred HCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 709999999999999829899999999797999999999999999