HHsearch alignment for GI: 254780694 and conserved domain: PRK12529
>PRK12529 RNA polymerase sigma factor; Provisional.
Probab=98.22 E-value=3.4e-06 Score=58.65 Aligned_cols=44 Identities=25% Similarity=0.268 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88897799999999-859997999999499988999999999998
Q gi|254780694|r 184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
T Consensus 126 ~~Lp~r~R~vF~L~r~eGls~~EIAe~LgiS~~tV~~~l~rAl~~ 170 (178)
T PRK12529 126 DTLRPRVKQAFLMATLDGMKQKDIAQALDIALPTVKKYIHQAYVT 170 (178)
T ss_pred HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 569978889987998829999999999895999999999999999