HHsearch alignment for GI: 254780694 and conserved domain: PRK12534

>PRK12534 RNA polymerase sigma factor; Provisional.
Probab=98.17  E-value=5.4e-06  Score=57.37  Aligned_cols=46  Identities=26%  Similarity=0.207  Sum_probs=42.2

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             88897799999999-85999799999949998899999999999807
Q gi|254780694|r  184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       136 ~~L~~~~r~vi~l~~~eg~s~~EIA~~l~i~~gTVksrl~ra~~~Lr  182 (187)
T PRK12534        136 AELEPPRSELIRTAFFEGITYEELAARTDTPIGTVKSWIRRGLAKLK  182 (187)
T ss_pred             HHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             86899899999999984999999999989199999999999999999