HHsearch alignment for GI: 254780694 and conserved domain: PRK12534
>PRK12534 RNA polymerase sigma factor; Provisional.
Probab=98.17 E-value=5.4e-06 Score=57.37 Aligned_cols=46 Identities=26% Similarity=0.207 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 88897799999999-85999799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 136 ~~L~~~~r~vi~l~~~eg~s~~EIA~~l~i~~gTVksrl~ra~~~Lr 182 (187)
T PRK12534 136 AELEPPRSELIRTAFFEGITYEELAARTDTPIGTVKSWIRRGLAKLK 182 (187)
T ss_pred HHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 86899899999999984999999999989199999999999999999