HHsearch alignment for GI: 254780694 and conserved domain: PRK12537

>PRK12537 RNA polymerase sigma factor; Provisional.

Probab=98.16  E-value=5.3e-06  Score=57.41  Aligned_cols=45  Identities=24%  Similarity=0.375  Sum_probs=40.8

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             8897799999999-85999799999949998899999999999807
Q gi|254780694|r  185 ELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       185 ~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       135 ~L~~~~r~~i~l~~~eg~s~~EIA~~l~is~~TVk~rl~rA~~~LR  180 (184)
T PRK12537        135 QLEPARRNCILHAYVDGCSHAEIAQRLGAPLGTVKAWIKRSLKALR  180 (184)
T ss_pred             HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             0999899999998843999999999989299999999999999999