HHsearch alignment for GI: 254780694 and conserved domain: PRK12538

>PRK12538 RNA polymerase sigma factor; Provisional.
Probab=98.09  E-value=1e-05  Score=55.62  Aligned_cols=47  Identities=13%  Similarity=0.127  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf             888977999999998-59997999999499988999999999998079
Q gi|254780694|r  184 FELTGREVECLTWIS-EGKTSDEIAVILGISRNTVNNYIASIMRKTAT  230 (246)
Q Consensus       184 ~~LT~RE~eVl~lia-~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv  230 (246)
T Consensus       170 ~~Lp~~~R~vl~L~~~egls~~EIA~~Lgis~~TVKsrL~RAr~~LR~  217 (233)
T PRK12538        170 QRLPEQQRIAVILSYHENMSNGEIAEVMDTTVAAVESLLKRGRQQLRD  217 (233)
T ss_pred             HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             759999999999999849999999999892999999999999999999