HHsearch alignment for GI: 254780694 and conserved domain: PRK12538
>PRK12538 RNA polymerase sigma factor; Provisional.
Probab=98.09 E-value=1e-05 Score=55.62 Aligned_cols=47 Identities=13% Similarity=0.127 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 888977999999998-59997999999499988999999999998079
Q gi|254780694|r 184 FELTGREVECLTWIS-EGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 (246)
Q Consensus 184 ~~LT~RE~eVl~lia-~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv 230 (246)
T Consensus 170 ~~Lp~~~R~vl~L~~~egls~~EIA~~Lgis~~TVKsrL~RAr~~LR~ 217 (233)
T PRK12538 170 QRLPEQQRIAVILSYHENMSNGEIAEVMDTTVAAVESLLKRGRQQLRD 217 (233)
T ss_pred HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 759999999999999849999999999892999999999999999999