HHsearch alignment for GI: 254780694 and conserved domain: PRK12540

>PRK12540 RNA polymerase sigma factor; Provisional.

Probab=98.01  E-value=1.6e-05  Score=54.24  Aligned_cols=47  Identities=19%  Similarity=0.268  Sum_probs=43.4

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf             88897799999999-859997999999499988999999999998079
Q gi|254780694|r  184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTAT  230 (246)
Q Consensus       184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv  230 (246)
T Consensus       110 ~~Lp~~~R~vl~L~~~egls~~EIA~iL~is~gTVKsRL~RAr~kLr~  157 (181)
T PRK12540        110 EKLPQDQREALILVGASGFSYEDAAAICGCAVGTIKSRVNRARSKLSA  157 (181)
T ss_pred             HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             819999989988799809999999999894999999999999999999