HHsearch alignment for GI: 254780694 and conserved domain: PRK12541
>PRK12541 RNA polymerase sigma factor; Provisional.
Probab=98.15 E-value=6.2e-06 Score=56.94 Aligned_cols=46 Identities=22% Similarity=0.104 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 88897799999999-85999799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 111 ~~Lp~~~R~v~~L~~~~g~s~~EIA~~lgis~~tVk~~l~RArk~Lr 157 (161)
T PRK12541 111 SSLPLERRNVLLLRDYYGFSYKEIAEMTGLSLAKVKIELHRGRKETK 157 (161)
T ss_pred HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 81999999999989974999999999989399999999999999998