HHsearch alignment for GI: 254780694 and conserved domain: PRK12541

>PRK12541 RNA polymerase sigma factor; Provisional.
Probab=98.15  E-value=6.2e-06  Score=56.94  Aligned_cols=46  Identities=22%  Similarity=0.104  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             88897799999999-85999799999949998899999999999807
Q gi|254780694|r  184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       111 ~~Lp~~~R~v~~L~~~~g~s~~EIA~~lgis~~tVk~~l~RArk~Lr  157 (161)
T PRK12541        111 SSLPLERRNVLLLRDYYGFSYKEIAEMTGLSLAKVKIELHRGRKETK  157 (161)
T ss_pred             HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             81999999999989974999999999989399999999999999998