HHsearch alignment for GI: 254780694 and conserved domain: PRK12542
>PRK12542 RNA polymerase sigma factor; Provisional.
Probab=98.05 E-value=1.2e-05 Score=55.18 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 88977999999998-5999799999949998899999999999807
Q gi|254780694|r 185 ELTGREVECLTWIS-EGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 185 ~LT~RE~eVl~lia-~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 122 ~Lp~~~R~v~~L~~~~gls~~EIA~~L~is~~tVk~rl~RArk~Lr 167 (185)
T PRK12542 122 ELNESNRQVFKYKVFYNLTYQEISSVMGITEANVRKQFERARKRVQ 167 (185)
T ss_pred HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 2999888997679983999999999989299999999999999999