HHsearch alignment for GI: 254780694 and conserved domain: PRK12542

>PRK12542 RNA polymerase sigma factor; Provisional.
Probab=98.05  E-value=1.2e-05  Score=55.18  Aligned_cols=45  Identities=18%  Similarity=0.302  Sum_probs=41.9

Q ss_pred             CCCHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             88977999999998-5999799999949998899999999999807
Q gi|254780694|r  185 ELTGREVECLTWIS-EGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       185 ~LT~RE~eVl~lia-~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       122 ~Lp~~~R~v~~L~~~~gls~~EIA~~L~is~~tVk~rl~RArk~Lr  167 (185)
T PRK12542        122 ELNESNRQVFKYKVFYNLTYQEISSVMGITEANVRKQFERARKRVQ  167 (185)
T ss_pred             HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             2999888997679983999999999989299999999999999999