HHsearch alignment for GI: 254780694 and conserved domain: PRK12544
>PRK12544 RNA polymerase sigma factor; Provisional.
Probab=97.85 E-value=4.7e-05 Score=51.33 Aligned_cols=45 Identities=9% Similarity=-0.009 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 8897799999999-85999799999949998899999999999807
Q gi|254780694|r 185 ELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 185 ~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 149 ~Lp~~~R~vl~Lr~~eglS~~EIAe~Lgis~~tVks~L~RAR~~Lr 194 (207)
T PRK12544 149 ALPAKYARVFMMREFIELETPEICHNEDLTVSNLNVMLYRSRLRLR 194 (207)
T ss_pred HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 3999999999999981999999999979799999999999999999