HHsearch alignment for GI: 254780694 and conserved domain: PRK12544

>PRK12544 RNA polymerase sigma factor; Provisional.
Probab=97.85  E-value=4.7e-05  Score=51.33  Aligned_cols=45  Identities=9%  Similarity=-0.009  Sum_probs=42.2

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             8897799999999-85999799999949998899999999999807
Q gi|254780694|r  185 ELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       185 ~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       149 ~Lp~~~R~vl~Lr~~eglS~~EIAe~Lgis~~tVks~L~RAR~~Lr  194 (207)
T PRK12544        149 ALPAKYARVFMMREFIELETPEICHNEDLTVSNLNVMLYRSRLRLR  194 (207)
T ss_pred             HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             3999999999999981999999999979799999999999999999