HHsearch alignment for GI: 254780694 and conserved domain: PRK13856
>PRK13856 two-component response regulator VirG; Provisional.
Probab=95.79 E-value=0.011 Score=36.14 Aligned_cols=114 Identities=11% Similarity=0.123 Sum_probs=65.4
Q ss_pred HHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 433332144571475033736899999997178754698999999999999997-5420146779888889779999999
Q gi|254780694|r 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN-MFKSYDVHWGKDFELTGREVECLTW 196 (246)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~LT~RE~eVl~l 196 (246)
T Consensus 87 d~i~~l~~GADDYl~KPf~~~EL~aRi~~~lrr~~~~~~~~~~~~~~~~~~~ld~~~~~l~~~~~~~v~LT~~E~~lL~~ 166 (241)
T PRK13856 87 DKVVALELGATDFIAKPFGTREFLARIRVALRVRPNVVRTKDRRSFCFADWTLNLRQRRLISEAGGEVKLTAGEFNLLVA 166 (241)
T ss_pred HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCEEEECCCCEEEEECCEEEECCHHHHHHHHH
T ss_conf 99999876998899777677799999999987454656777674499899999757878999799698678899999999
Q ss_pred HHCC----CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHCCC
Q ss_conf 9859----9979999994-----999889999999999980799
Q gi|254780694|r 197 ISEG----KTSDEIAVIL-----GISRNTVNNYIASIMRKTATK 231 (246)
Q Consensus 197 ia~G----~t~~eIA~~L-----~iS~~TV~~hl~~i~~KLgv~ 231 (246)
T Consensus 167 L~~~~~~vvsRe~L~~~~~~~~~~~~~r~id~~I~rLRkKL~~~ 210 (241)
T PRK13856 167 FLEKPRDVLSREQLLIASRVREEEVYDRSIDVLILRLRRKLEQD 210 (241)
T ss_pred HHHCCCCEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 98769943819999998445677888686999999999973138