HHsearch alignment for GI: 254780694 and conserved domain: PRK13919

>PRK13919 putative RNA polymerase sigma E protein; Provisional.
Probab=98.23  E-value=3.5e-06  Score=58.56  Aligned_cols=45  Identities=22%  Similarity=0.308  Sum_probs=41.3

Q ss_pred             CCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             889779999999-985999799999949998899999999999807
Q gi|254780694|r  185 ELTGREVECLTW-ISEGKTSDEIAVILGISRNTVNNYIASIMRKTA  229 (246)
Q Consensus       185 ~LT~RE~eVl~l-ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  229 (246)
T Consensus       136 ~L~~~~r~vi~L~~~~g~s~~EIA~~L~is~~TVk~~l~rA~k~Lr  181 (187)
T PRK13919        136 ALSPEERRVIEVLYYQGYTHREAARLLGLPLGTLKTWARRALSKLK  181 (187)
T ss_pred             CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             4999999999999985999999999989399999999999999999