HHsearch alignment for GI: 254780694 and conserved domain: TIGR00721
>TIGR00721 tfx DNA-binding protein, Tfx family; InterPro: IPR004645 This is a family of Tfx DNA-binding proteins, which is restricted to the archaea. Homology among the members is strongest in the helix-turn-helix-containing N-terminal region. Tfx from Methanobacterium thermoautotrophicum is associated with the operon for molybdenum formyl-methanofuran dehydrogenase and binds a DNA sequence near its promoter.; GO: 0003677 DNA binding.
Probab=91.41 E-value=0.39 Score=26.15 Aligned_cols=46 Identities=26% Similarity=0.283 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 8889779999999985999799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 5 tFLTe~Q~kVL~lR~kGl~Q~eIAk~LkTtRaNvS~iEkrA~EnIe 50 (142)
T TIGR00721 5 TFLTERQIKVLELREKGLKQKEIAKILKTTRANVSIIEKRALENIE 50 (142)
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 4340656899998633888788987726720137898887443237