HHsearch alignment for GI: 254780694 and conserved domain: TIGR02997
>TIGR02997 Sig70-cyanoRpoD RNA polymerase sigma factor, cyanobacterial RpoD-like family.
Probab=95.68 E-value=0.021 Score=34.36 Aligned_cols=44 Identities=39% Similarity=0.407 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHH---H--HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 889779999999---9--8599979999994999889999999999980
Q gi|254780694|r 185 ELTGREVECLTW---I--SEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 185 ~LT~RE~eVl~l---i--a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
T Consensus 287 ~L~p~e~~VL~LRfGL~~~~~~TL~eiG~~l~lSRERVRQiE~~AL~kL 335 (336)
T TIGR02997 287 ELTPRERQVLRLRFGLDDGEPLTLAEIGERLNLSRERVRQIEAKALRKL 335 (336)
T ss_pred HCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 3798899999985789989753278999883883688889999997534