HHsearch alignment for GI: 254780694 and conserved domain: pfam02796
>pfam02796 HTH_7 Helix-turn-helix domain of resolvase.
Probab=94.35 E-value=0.078 Score=30.62 Aligned_cols=39 Identities=41% Similarity=0.554 Sum_probs=32.9
Q ss_pred CCCCHH-HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 888977-999999998599979999994999889999999
Q gi|254780694|r 184 FELTGR-EVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 (246)
Q Consensus 184 ~~LT~R-E~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~ 222 (246)
T Consensus 4 ~kl~~~~~~~v~~L~~~G~~i~~IA~~~~vsrsTvYRyl~ 43 (45)
T pfam02796 4 PKLNEEDINEVITLLEEGISIKQIAKIFGISRSTVYRYLA 43 (45)
T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHCC
T ss_conf 1038999999999998799499999998600888876445