HHsearch alignment for GI: 254780694 and conserved domain: pfam03472
>pfam03472 Autoind_bind Autoinducer binding domain. This domain is found a a large family of transcriptional regulators. This domain specifically binds to autoinducer molecules.
Probab=98.75 E-value=2.3e-08 Score=72.52 Aligned_cols=129 Identities=13% Similarity=-0.024 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCH----
Q ss_conf 9999999999998719302300026663111232100068958999999966984517389999852324430325----
Q gi|254780694|r 42 TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP---- 117 (246)
Q Consensus 42 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---- 117 (246)
T Consensus 2 ~~~l~~~l~~~~~~lGf~~~~y~~~~~~~~~~~~~~~~~~yP~~W~~~Y~~~~y~~~DPv~~~~~~~~~p~~W~~~~~~~ 81 (146)
T pfam03472 2 EEELWDLLERLAAALGFDYFAYGLLPPSPGSRPDVLLLSNYPAEWVERYVEEGYYRIDPVVRHALRSSTPFSWSDLDLAS 81 (146)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEECCCHHHHHHHHHCCCEECCHHHHHHHCCCCCEECCCCCCCC
T ss_conf 79999999999997699879997435898998767997089999999999779555087999986289998877686679
Q ss_pred ------HHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHH----HHHHHHHHHHHHHH
Q ss_conf ------4333321445714750337368999999971787546989----99999999999997
Q gi|254780694|r 118 ------ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD----RLWEIGLLAAYQAN 171 (246)
Q Consensus 118 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 171 (246)
T Consensus 82 ~~~~~~~~~a~~~Gl~~G~~~pv~~~~g~~g~~s~a~~~~~-~~~~~~~~~~~~l~~la~~~h~ 144 (146)
T pfam03472 82 PRARRVFDEARDFGLRAGYTVPVHGPNGRLGALSLAGDGRD-LDAVELIRARAELQLLAIHAHL 144 (146)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEECCCCC-CCHHHHHHHHHHHHHHHHHHHH
T ss_conf 77999999999859962589998879998899998569999-8989999989999999999996